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Broad Institute Inc custom perl scripts
Custom Perl Scripts, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/custom+perl+scripts/custom+perl+scripts/pm40650881-281-6-2
Average 90 stars, based on 1 article reviews
custom perl scripts - by Bioz Stars, 2026-11
90/100 stars

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Article Title: A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion
Article Snippet: In order to compare unigene sets between species, custom Perl scripts were used to identify different orthology pro les (single-copy in all species, present in all species, etc) in the selected insect species.

Article Title: New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters
Article Snippet: Abundance of all the KEGG modules in each experiment was calculated with custom perl scripts ( https://sourceforge.net/projects/perl-scripts-kegg/ ).

Article Title: Whole-genome landscape of Medicago truncatula symbiotic genes.
Article Snippet: 1LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.. 2University of British Columbia, Vancouver, Canada.. 3IPS2, CNRS, INRA, Universities of Paris Diderot and Sorbonne Paris Cité, Gif sur Yvette, France.

Article Title: A transcriptomic and proteomic atlas of expression in the Nezara viridula (Heteroptera: Pentatomidae) midgut suggests the compartmentalization of xenobiotic metabolism and nutrient digestion
Article Snippet: In order to compare unigene sets between species, custom Perl scripts were used to identify different orthology profiles (single-copy in all species, present in all species, etc) in the selected insect species.

Article Title: Transcriptome analysis reveals molecular mechanisms underlying chloroplast biogenesis in albino Agave angustifolia plantlets.
Article Snippet: Edited by C.H.. Foyer Abstract Albino plants display partial or complete loss of photosynthetic pigments and defective thylakoid membrane development, consequently impairing plastid function and development.. These distinctive attributes render albino plants excellent models for investigating chloroplast biogenesis.

Article Title: Genetic and chemical disruption of amyloid precursor protein processing impairs zebrafish sleep maintenance.
Article Snippet: The movement of each larva was measured, and duration of movement was recorded with an integration time of 60 sec. Data were processed using custom PERL and MATLAB (The Mathworks, R2019a) scripts, and statistical tests were performed using MATLAB (The Mathworks, R2019a).

Article Title: The microbiome exists in the neuroretina and choroid in normal conditions and responds rapidly to retinal injury
Article Snippet: Taxon abundances were computed via custom Perl scripts and rendered graphically in SVG format.

Scaffolding:

Article Title: From macro to micro: De novo genomes of Aedes mosquitoes enable comparative genomics among close and distant relatives.
Article Snippet: .. 2.2.4; 41 Broad Institute 2019), and custom Perl scripts for aligning the short-reads to a draft contig-level 42 genome assembly and preparing it for scaffolding (Table Program details). ..



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